Package: bc3net 1.0.5

bc3net: Gene Regulatory Network Inference with Bc3net

Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).

Authors:Ricardo de Matos Simoes [aut, cre], Frank Emmert-Streib [aut]

bc3net_1.0.5.tar.gz
bc3net_1.0.5.zip(r-4.7)bc3net_1.0.5.zip(r-4.6)bc3net_1.0.5.zip(r-4.5)
bc3net_1.0.5.tgz(r-4.6-any)bc3net_1.0.5.tgz(r-4.5-any)
bc3net_1.0.5.tar.gz(r-4.7-any)bc3net_1.0.5.tar.gz(r-4.6-any)
bc3net_1.0.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
bc3net/json (API)

# Install 'bc3net' in R:
install.packages('bc3net', repos = c('https://bio-complexity.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • exanet - Example gene regulatory network for testing purposes only
  • exgensets - Example gene sets defined from the CPDB database
  • expmat - Test gene expression dataset

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.26 score 91 scripts 703 downloads 2 mentions 7 exports 13 dependencies

Last updated from:1236792160. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK127
source / vignettesOK148
linux-release-x86_64OK134
macos-release-arm64OK176
macos-oldrel-arm64OK210
windows-develOK82
windows-releaseOK87
windows-oldrelOK96
wasm-releaseOK99

Exports:bc3netc3mtcenrichmentgetgccgpeamakenullmimwrap

Dependencies:c3netclicpp11glueigraphinfotheolatticelifecyclemagrittrMatrixpkgconfigrlangvctrs