Package: bc3net 1.0.4

bc3net: Gene Regulatory Network Inference with Bc3net

Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).

Authors:Ricardo de Matos Simoes [aut, cre], Frank Emmert-Streib [aut]

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bc3net.pdf |bc3net.html✨
bc3net/json (API)

# Install 'bc3net' in R:
install.packages('bc3net', repos = c('https://bio-complexity.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • exanet - Example gene regulatory network for testing purposes only
  • exgensets - Example gene sets defined from the CPDB database
  • expmat - Test gene expression dataset

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7 exports 0.71 score 13 dependencies 2 mentions 61 scripts 265 downloads

Last updated 8 years agofrom:bc56bcae2b. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 31 2024
R-4.5-winNOTEAug 31 2024
R-4.5-linuxNOTEAug 31 2024
R-4.4-winOKAug 31 2024
R-4.4-macOKAug 31 2024
R-4.3-winOKAug 31 2024
R-4.3-macOKAug 31 2024

Exports:bc3netc3mtcenrichmentgetgccgpeamakenullmimwrap

Dependencies:c3netclicpp11glueigraphinfotheolatticelifecyclemagrittrMatrixpkgconfigrlangvctrs